Beatrix is not a cyclops. She has (or had) two fully functioning eyes. Cyclops implies she only ever had one. Furthermore, people can still be attractive with deformities such as a (presumably) missing/injured eye.
Don't get me as one of those "hurr durr that one progeria chick is so beautiful" dumbasses, but I'm just saying it's not a matter of black and white. One single facet like that is nothing in the grand scheme of things.
I think you should play Katawa Shoujo, man. It'll teach you some things. I for one think Hanako is the prettiest girl in the game, burns or no. And I can link you to a sorta similar IRL example if you'd like.
I don't play weeaboo stuff.
And Cyclops is a being with one eye. She has one eye. So mockingly calling her a cyclops fits pretty well.