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I just got my special 3DS (Fire Emblem: Awakening), with the game pre-installed. Now I'm transferring data from one 3DS (the one I had before) to this one, and it says it's going to wipe all data from the target (Awakening) 3DS.
Does that delete the Awakening download? I don't care about the files -- I haven't started that copy. But will the game still be on it?
I couldn't find it in the sticky...
Official President of the The National Association for the Preservation of Manikins (SMT: Nocturne)
You will have to go into the eShop, go to your download history, and redownload Fire Emblem. In other words, it will get wiped out in the transfer, but you will be able to download it, and it will be tied to your system after the transfer.