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GC version is better because that was the console it was developed on and then ported the wii later. The controls are just so tacked on and pointless. The GC version supports progressive scan if i remember correctly as well so besides the controls and the map being flipped (I don't know why either) there isn't any real difference. If you like a sore wrist from waggling the controller to slash the sword then go for it but I'd take the controller version.