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I don't usually nickname them unless it's a playthrough just to go through the story just for the sake of playing the game. Right now I'm naming all my pokemon after other Nintendo characters based upon similarities.
Feraligatr - KINGK.ROOL Victreebel - P. PIRANHA Vaporeon - ZORA Ampharos - GOHT Togetic (wish I had a Shiny Stone...) - LAKITU Soodowoodo - GREAT DEKU Tyranitar - BOWSER (I almost went with Yoshi, since they're both dinosaurs)
But that's all I can remember right now, because I've been using them in my main team.
PSN Name: Exkzol Playing: Pokemon Soul Silver, Super Mario Galaxy, God of War III